public final class TaxonomyDataManager extends RunnableProcess
Constructor and Description |
---|
TaxonomyDataManager(MainFrameApplication mf,
TreePanel treepanel,
Phylogeny phy) |
TaxonomyDataManager(MainFrameApplication mf,
TreePanel treepanel,
Phylogeny phy,
boolean delete,
boolean allow_simple_name) |
Modifier and Type | Method and Description |
---|---|
static UniProtTaxonomy |
obtainUniProtTaxonomy(java.lang.String simple_name,
org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) |
static UniProtTaxonomy |
obtainUniProtTaxonomy(Taxonomy tax,
java.lang.Object query,
org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) |
void |
run() |
end, start
public TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)
public TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name)
public static final UniProtTaxonomy obtainUniProtTaxonomy(Taxonomy tax, java.lang.Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) throws java.io.IOException, AncestralTaxonomyInferenceException
java.io.IOException
AncestralTaxonomyInferenceException
public static final UniProtTaxonomy obtainUniProtTaxonomy(java.lang.String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) throws java.io.IOException, AncestralTaxonomyInferenceException
java.io.IOException
AncestralTaxonomyInferenceException
public void run()