public final class PhyloXmlUtil
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static java.util.regex.Pattern |
LIT_REF_DOI_PATTERN |
static java.lang.String |
OTHER |
static int |
ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT |
static java.lang.String |
SEQ_TYPE_DNA |
static java.lang.String |
SEQ_TYPE_PROTEIN |
static java.lang.String |
SEQ_TYPE_RNA |
static java.util.regex.Pattern |
SEQUENCE_SYMBOL_PATTERN |
static java.util.Set<java.lang.String> |
SEQUENCE_TYPES |
static java.util.regex.Pattern |
TAXOMONY_CODE_PATTERN |
static java.util.List<java.lang.String> |
TAXONOMY_RANKS_LIST |
static java.util.Set<java.lang.String> |
TAXONOMY_RANKS_SET |
static java.lang.String |
UNIPROT_TAX_PROVIDER |
static java.lang.String |
UNKNOWN |
static java.lang.String |
VECTOR_PROPERTY_REF |
static java.lang.String |
VECTOR_PROPERTY_TYPE |
Constructor and Description |
---|
PhyloXmlUtil() |
public static final java.lang.String OTHER
public static final java.lang.String UNKNOWN
public static final java.util.regex.Pattern SEQUENCE_SYMBOL_PATTERN
public static final java.util.regex.Pattern TAXOMONY_CODE_PATTERN
public static final java.util.regex.Pattern LIT_REF_DOI_PATTERN
public static final java.util.Set<java.lang.String> SEQUENCE_TYPES
public static final java.util.List<java.lang.String> TAXONOMY_RANKS_LIST
public static final java.util.Set<java.lang.String> TAXONOMY_RANKS_SET
public static final int ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT
public static final java.lang.String VECTOR_PROPERTY_REF
public static final java.lang.String VECTOR_PROPERTY_TYPE
public static final java.lang.String UNIPROT_TAX_PROVIDER
public static final java.lang.String SEQ_TYPE_RNA
public static final java.lang.String SEQ_TYPE_DNA
public static final java.lang.String SEQ_TYPE_PROTEIN