public class FarmJobParameters
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static int |
DEFAULT_BATCH_SIZE |
static boolean |
DEFAULT_DIR_SPLIT |
static int |
DEFAULT_JOB_TIME |
static int |
DEFAULT_NR_ALIGNMENTS |
static int |
DEFAULT_NR_THREADS |
static java.lang.String |
DEFAULT_PDB_PATH |
static java.lang.String |
DEFAULT_SERVER_URL |
Constructor and Description |
---|
FarmJobParameters() |
Modifier and Type | Method and Description |
---|---|
java.lang.String |
getCacheFilePath() |
int |
getNrAlignments() |
java.lang.String |
getPdbFilePath() |
java.lang.String |
getServer() |
int |
getStepSize()
how many pairs should be requested for alignment from server?
|
int |
getThreads() |
int |
getTime() |
java.lang.String |
getUsername() |
boolean |
isPdbDirSplit() |
boolean |
isRunBackground()
Flag if a job that only runs one parallell job should be run in its own thread or in the main thread.
|
boolean |
isUpdateRemediatedFiles() |
boolean |
isVerbose()
Flag if the job should be run in verbose mode.
|
void |
setCacheFilePath(java.lang.String cacheFilePath) |
void |
setNrAlignments(int nrAlignments) |
void |
setPdbDirSplit(boolean pdbDirSplit) |
void |
setPdbFilePath(java.lang.String pdbFilePath) |
void |
setRunBackground(boolean runBackground) |
void |
setServer(java.lang.String server) |
void |
setStepSize(int stepSize) |
void |
setThreads(int threads) |
void |
setTime(int time) |
void |
setUpdateRemediatedFiles(boolean updateRemediatedFiles) |
void |
setUsername(java.lang.String username) |
void |
setVerbose(boolean verbose) |
java.lang.String |
toString() |
public static final int DEFAULT_JOB_TIME
public static final int DEFAULT_NR_ALIGNMENTS
public static final int DEFAULT_NR_THREADS
public static final java.lang.String DEFAULT_SERVER_URL
public static final java.lang.String DEFAULT_PDB_PATH
public static final boolean DEFAULT_DIR_SPLIT
public static final int DEFAULT_BATCH_SIZE
public java.lang.String getPdbFilePath()
public void setPdbFilePath(java.lang.String pdbFilePath)
public java.lang.String getCacheFilePath()
public void setCacheFilePath(java.lang.String cacheFilePath)
public int getNrAlignments()
public void setNrAlignments(int nrAlignments)
public int getTime()
public void setTime(int time)
public int getThreads()
public void setThreads(int threads)
public java.lang.String getServer()
public void setServer(java.lang.String server)
public boolean isPdbDirSplit()
public void setPdbDirSplit(boolean pdbDirSplit)
public java.lang.String getUsername()
public void setUsername(java.lang.String username)
public boolean isRunBackground()
public void setRunBackground(boolean runBackground)
public int getStepSize()
public void setStepSize(int stepSize)
public boolean isVerbose()
public void setVerbose(boolean verbose)
public boolean isUpdateRemediatedFiles()
public void setUpdateRemediatedFiles(boolean updateRemediatedFiles)
public java.lang.String toString()
toString
in class java.lang.Object